CCH90403.1 protein (Modestobacter marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCH90403.1

Uncharacterized protein; Homologs of previously reported genes of unknown function. (288 aa)

Predicted Functional Partners:

CCH90402.1

0.825

CCH90404.1

0.763

murB

0.624

fliM

0.605

CCH86277.1

0.562

CCH89880.1

0.434

CCH88587.1

0.418

CCH90811.1

0.408

Your Current Organism:

Modestobacter marinus

NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH86277.1	CCH90403.1	MODMU_0826	MODMU_5023	Putative DNA/RNA helicase, superfamily II; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Uncharacterized protein; Homologs of previously reported genes of unknown function.	0.562
CCH86277.1	CCH90811.1	MODMU_0826	MODMU_5438	Putative DNA/RNA helicase, superfamily II; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Homologs of previously reported genes of unknown function.	0.759
CCH88587.1	CCH90403.1	MODMU_3163	MODMU_5023	Arginase; Function of strongly homologous gene; enzyme; Belongs to the arginase family.	Uncharacterized protein; Homologs of previously reported genes of unknown function.	0.418
CCH89880.1	CCH90403.1	MODMU_4497	MODMU_5023	Putative 5'-nucleotidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the 5'-nucleotidase family.	Uncharacterized protein; Homologs of previously reported genes of unknown function.	0.434
CCH90402.1	CCH90403.1	MODMU_5022	MODMU_5023	Uncharacterized protein; Homologs of previously reported genes of unknown function.	Uncharacterized protein; Homologs of previously reported genes of unknown function.	0.825
CCH90402.1	CCH90404.1	MODMU_5022	MODMU_5024	Uncharacterized protein; Homologs of previously reported genes of unknown function.	Phage shock protein C, PspC; Function of strongly homologous gene; regulator.	0.762
CCH90402.1	murB	MODMU_5022	MODMU_5021	Uncharacterized protein; Homologs of previously reported genes of unknown function.	UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.	0.683
CCH90403.1	CCH86277.1	MODMU_5023	MODMU_0826	Uncharacterized protein; Homologs of previously reported genes of unknown function.	Putative DNA/RNA helicase, superfamily II; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.562
CCH90403.1	CCH88587.1	MODMU_5023	MODMU_3163	Uncharacterized protein; Homologs of previously reported genes of unknown function.	Arginase; Function of strongly homologous gene; enzyme; Belongs to the arginase family.	0.418
CCH90403.1	CCH89880.1	MODMU_5023	MODMU_4497	Uncharacterized protein; Homologs of previously reported genes of unknown function.	Putative 5'-nucleotidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the 5'-nucleotidase family.	0.434
CCH90403.1	CCH90402.1	MODMU_5023	MODMU_5022	Uncharacterized protein; Homologs of previously reported genes of unknown function.	Uncharacterized protein; Homologs of previously reported genes of unknown function.	0.825
CCH90403.1	CCH90404.1	MODMU_5023	MODMU_5024	Uncharacterized protein; Homologs of previously reported genes of unknown function.	Phage shock protein C, PspC; Function of strongly homologous gene; regulator.	0.763
CCH90403.1	CCH90811.1	MODMU_5023	MODMU_5438	Uncharacterized protein; Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.408
CCH90403.1	fliM	MODMU_5023	MODMU_1020	Uncharacterized protein; Homologs of previously reported genes of unknown function.	Flagellar motor switch protein; Function of strongly homologous gene; structure.	0.605
CCH90403.1	murB	MODMU_5023	MODMU_5021	Uncharacterized protein; Homologs of previously reported genes of unknown function.	UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.	0.624
CCH90404.1	CCH90402.1	MODMU_5024	MODMU_5022	Phage shock protein C, PspC; Function of strongly homologous gene; regulator.	Uncharacterized protein; Homologs of previously reported genes of unknown function.	0.762
CCH90404.1	CCH90403.1	MODMU_5024	MODMU_5023	Phage shock protein C, PspC; Function of strongly homologous gene; regulator.	Uncharacterized protein; Homologs of previously reported genes of unknown function.	0.763
CCH90404.1	murB	MODMU_5024	MODMU_5021	Phage shock protein C, PspC; Function of strongly homologous gene; regulator.	UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.	0.555
CCH90811.1	CCH86277.1	MODMU_5438	MODMU_0826	Homologs of previously reported genes of unknown function.	Putative DNA/RNA helicase, superfamily II; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.759
CCH90811.1	CCH90403.1	MODMU_5438	MODMU_5023	Homologs of previously reported genes of unknown function.	Uncharacterized protein; Homologs of previously reported genes of unknown function.	0.408