STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH90407.1Transcriptional regulator, XRE family; Function of strongly homologous gene; regulator. (174 aa)    
Predicted Functional Partners:
CCH90406.1
Homologs of previously reported genes of unknown function.
       0.829
CCH88931.1
Polyketide cyclase / dehydrase family protein; Function of strongly homologous gene; enzyme.
  
   
 0.772
CCH90008.1
Putative ubiquinone chaperone; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
     0.766
CCH86052.1
Arsenite-transporting ATPase; Function of strongly homologous gene; enzyme.
  
     0.731
CCH90382.1
1-acyl-sn-glycerol-3-phosphate acyltransferase; Function of strongly homologous gene; enzyme.
  
     0.723
CCH86051.1
Oxyanion-translocating ATPase; Function of strongly homologous gene; transporter.
  
     0.703
CCH90408.1
L-asparaginase II; Function of strongly homologous gene; enzyme.
       0.700
galE-3
UDP-glucose 4-epimerase; Function of strongly homologous gene; enzyme.
  
     0.645
CCH90398.1
Homologs of previously reported genes of unknown function.
  
     0.639
CCH90054.1
Diacylglycerol O-acyltransferase; Function of strongly homologous gene; enzyme; Belongs to the long-chain O-acyltransferase family.
  
     0.628
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.