STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH90408.1L-asparaginase II; Function of strongly homologous gene; enzyme. (317 aa)    
Predicted Functional Partners:
CCH90411.1
Glycine cleavage T protein (Aminomethyl transferase); Function of strongly homologous gene; enzyme; Belongs to the GcvT family.
     0.868
CCH87183.1
Homologs of previously reported genes of unknown function.
      0.715
CCH90407.1
Transcriptional regulator, XRE family; Function of strongly homologous gene; regulator.
       0.700
CCH90406.1
Homologs of previously reported genes of unknown function.
       0.674
CCH90409.1
Homologs of previously reported genes of unknown function.
       0.643
CCH90410.1
Homologs of previously reported genes of unknown function.
       0.576
CCH90405.1
Homologs of previously reported genes of unknown function.
       0.555
CCH90412.1
Nickel uptake regulator, Fur family; Function of strongly homologous gene; regulator; Belongs to the Fur family.
       0.525
CCH90413.1
Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; Function of strongly homologous gene; enzyme.
       0.470
uppP
Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
 
     0.402
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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