STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH90409.1Homologs of previously reported genes of unknown function. (187 aa)    
Predicted Functional Partners:
whiG
RNA polymerase sigma factor whiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
 
 
 0.949
sigF
RNA polymerase sigma-F factor; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family.
  
 
 
 0.870
fliA
RNA polymerase, sigma 28 subunit for flagellar operon; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family.
  
 
 
 0.866
CCH90410.1
Homologs of previously reported genes of unknown function.
       0.803
SsgA
Sporulation and cell division protein, SsgA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; factor.
  
   
 0.790
CCH88740.1
Transcriptional regulator, XRE family; Function of strongly homologous gene; regulator.
  
   
 0.782
CCH90524.1
Homologs of previously reported genes of unknown function.
  
     0.764
CCH86225.1
Homologs of previously reported genes of unknown function.
  
     0.725
CCH87831.1
Homologs of previously reported genes of unknown function.
  
     0.716
CCH86045.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase; Function of strongly homologous gene; enzyme.
  
     0.711
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.