STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH90411.1Glycine cleavage T protein (Aminomethyl transferase); Function of strongly homologous gene; enzyme; Belongs to the GcvT family. (375 aa)    
Predicted Functional Partners:
CCH90408.1
L-asparaginase II; Function of strongly homologous gene; enzyme.
     0.868
CCH90412.1
Nickel uptake regulator, Fur family; Function of strongly homologous gene; regulator; Belongs to the Fur family.
       0.829
CCH87183.1
Homologs of previously reported genes of unknown function.
      0.735
erpA
Iron-sulfur cluster insertion protein erpA; Function of strongly homologous gene; factor; Belongs to the HesB/IscA family.
 
 
 0.711
CCH90409.1
Homologs of previously reported genes of unknown function.
       0.701
CCH90413.1
Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; Function of strongly homologous gene; enzyme.
       0.680
CCH90410.1
Homologs of previously reported genes of unknown function.
       0.647
CCH87277.1
Homologs of previously reported genes of unknown function.
  
     0.645
cysG
Uroporphyrinogen-III C-methyltransferase; Function of strongly homologous gene; enzyme.
     
 0.627
CCH89770.1
Putative Zn-dependent protease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.529
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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