STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH90417.1Conserved protein of unknown function; May play a role in the intracellular transport of hydrophobic ligands. (190 aa)    
Predicted Functional Partners:
rsmA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.828
CCH90418.1
Homologs of previously reported genes of unknown function.
       0.773
cysA-2
Thiosulfate sulfurtransferase; Function of strongly homologous gene; enzyme.
  
 
 0.763
CCH90416.1
Conserved protein of unknown function, putative coiled-coil domain; Homologs of previously reported genes of unknown function.
       0.652
CCH87336.1
ErfK/YbiS/YcfS/YnhG family protein.
  
     0.593
dnaX-2
DNA polymerase III, delta prime subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
     0.592
CCH89715.1
Phage shock protein A, PspA; Function of strongly homologous gene; cell process.
  
     0.574
CCH88923.1
Conserved protein of unknown function; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
  
     0.570
CCH86891.1
Homologs of previously reported genes of unknown function.
  
     0.569
rsbQ-3
Sigma factor sigB regulation protein rsbQ; Function of strongly homologous gene; factor.
   
   0.536
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.