STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH90459.1Acyl-CoA dehydrogenase; Function of strongly homologous gene; enzyme. (596 aa)    
Predicted Functional Partners:
CCH89317.1
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; Function of strongly homologous gene; enzyme.
  
 0.865
etfA
Electron transfer flavoprotein alpha subunit; Function of strongly homologous gene; carrier.
 
 0.796
fadB
enoyl-CoA hydratase; Function of strongly homologous gene; enzyme.
  
 0.743
phbA
acetyl-CoA acetyltransferase with thiolase domain (Acetoacetyl-CoA thiolase); Function of strongly homologous gene; enzyme; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.741
fadB-2
Enoyl-CoA hydratase/carnithine racemase; Function of strongly homologous gene; enzyme.
  
 0.738
CCH89891.1
Enoyl-CoA hydratase isomerase; Function of strongly homologous gene; enzyme; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.738
Echdc
Enoyl-CoA hydratase; Function of strongly homologous gene; enzyme.
  
 0.738
CCH85708.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; Function of strongly homologous gene; enzyme.
 
 
 0.696
etfB
Electron transfer flavoprotein subunit beta; Function of strongly homologous gene; carrier.
 
 
 0.690
korA
2-oxoacid:ferredoxin oxidoreductase, alpha subunit; Function of strongly homologous gene; enzyme.
  
 
 0.651
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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