STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mprA-2Response regulator mprA; Function of strongly homologous gene; regulator. (246 aa)    
Predicted Functional Partners:
CCH90481.1
Sensor protein; Function of strongly homologous gene; enzyme.
 0.977
phoR-2
Two-component Pi level signal transduction regulator, system with PhoB; Function of strongly homologous gene; enzyme.
 0.926
CCH87331.1
Diguanylate cyclase (GGDEF); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
    0.902
phoR
Two component signal transduction histidine kinase; Function of strongly homologous gene; enzyme.
 0.895
CCH89092.1
Diguanylate cyclase; Function of strongly homologous gene; enzyme.
 
 
    0.886
CCH90443.1
Sensor protein; Function of strongly homologous gene; enzyme.
 0.881
CCH90238.1
Putative Diguanylate cyclase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
    0.870
mtrB
Two component sensor histidine kinase mtrB; Function of strongly homologous gene; enzyme.
 0.866
CCH89663.1
Putative diguanylate cyclase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
 
 
    0.811
CCH89435.1
Two-component sensor histidine kinase; Function of strongly homologous gene; enzyme.
 
 0.775
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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