STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaC4-carboxymuconolactone decarboxylase; Function of strongly homologous gene; enzyme. (138 aa)    
Predicted Functional Partners:
pcaD
3-oxoadipate enol-lactonase; Function of strongly homologous gene; enzyme.
 
 0.998
pcaB
3-carboxy-cis,cis-muconate cycloisomerase; Function of strongly homologous gene; enzyme.
 
 
 0.998
pcaG
Protocatechuate 3,4-dioxygenase alpha chain; Function of strongly homologous gene; enzyme.
 
  
 0.992
CCH87906.1
Lipase/esterase; Function of strongly homologous gene; enzyme.
 
 
 0.989
pcaH
Protocatechuate 3,4-dioxygenase beta chain; Function of strongly homologous gene; enzyme.
 
  
 0.972
catC
Muconolactone Delta-isomerase; Function of strongly homologous gene; enzyme.
    
 0.911
CCH89604.1
Putative Alpha/beta hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.903
pobA
P-hydroxybenzoate hydroxylase; Function of strongly homologous gene; enzyme.
 
   
 0.866
CCH89598.1
Putative proline iminopeptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.823
CCH90488.1
Transcriptional regulator, IclR family; Function of strongly homologous gene; regulator.
     
 0.519
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.