STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pcaD3-oxoadipate enol-lactonase; Function of strongly homologous gene; enzyme. (259 aa)    
Predicted Functional Partners:
pcaC
4-carboxymuconolactone decarboxylase; Function of strongly homologous gene; enzyme.
  
 0.997
pcaB
3-carboxy-cis,cis-muconate cycloisomerase; Function of strongly homologous gene; enzyme.
  
 0.979
pcaH
Protocatechuate 3,4-dioxygenase beta chain; Function of strongly homologous gene; enzyme.
 
  
 0.908
CCH90900.1
Conserved protein of unknown function, putative Flavin reductase domain; Homologs of previously reported genes of unknown function.
 
 
    0.900
pcaG
Protocatechuate 3,4-dioxygenase alpha chain; Function of strongly homologous gene; enzyme.
 
  
 0.899
pobA
P-hydroxybenzoate hydroxylase; Function of strongly homologous gene; enzyme.
 
  0.675
CCH88253.1
Alpha/beta hydrolase fold protein.
  
     0.656
catC
Muconolactone Delta-isomerase; Function of strongly homologous gene; enzyme.
  
 
 0.553
CCH87644.1
Putative hydrolase or acyltransferase of alpha/beta superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.534
CCH88210.1
Carboxymuconolactone decarboxylase; Function of strongly homologous gene; enzyme.
    
  0.509
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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