Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pcaGProtocatechuate 3,4-dioxygenase alpha chain; Function of strongly homologous gene; enzyme. (227 aa)    
Predicted Functional Partners:
pcaH
Protocatechuate 3,4-dioxygenase beta chain; Function of strongly homologous gene; enzyme.
 
 
0.999
pcaB
3-carboxy-cis,cis-muconate cycloisomerase; Function of strongly homologous gene; enzyme.
 
 
 0.997
pcaC
4-carboxymuconolactone decarboxylase; Function of strongly homologous gene; enzyme.
 
 
 0.993
pobA
P-hydroxybenzoate hydroxylase; Function of strongly homologous gene; enzyme.
 
 
 0.987
pcaD
3-oxoadipate enol-lactonase; Function of strongly homologous gene; enzyme.
 
  
 0.899
pheB
Metapyrocatechase; Function of strongly homologous gene; enzyme.
  
  
 0.757
ligB-2
Protocatechuate 4,5-dioxygenase, beta chain; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 0.756
ligA
Protocatechuate 4,5-dioxygenase, alpha chain; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 0.756
CCH88796.1
Putative Extradiol ring-cleavage dioxygenase class III protein subunit B; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
    
 0.756
CCH88372.1
Putative 4-hydroxyphenylpyruvate dioxygenase containing a TIM-barrel fold (N-ter); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.690
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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