STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH90490.1Homologs of previously reported genes of unknown function. (355 aa)    
Predicted Functional Partners:
CCH86363.1
Homologs of previously reported genes of unknown function.
  
 
 0.817
CCH87711.1
Membrane protein of unknown function; No homology to any previously reported sequences.
 
     0.610
CCH90491.1
Putative Transcriptional regulator, TetR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
     
 0.560
CCH87300.1
ABC transporter; Function of strongly homologous gene; transporter.
 
     0.510
CCH86742.1
Membrane protein of unknown function; No homology to any previously reported sequences.
 
  
 0.482
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
   0.458
CCH86038.1
Exported protein of unknown function; No homology to any previously reported sequences.
  
 
 0.430
CCH88002.1
Putative lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
 
    0.428
CCH85557.1
Homologs of previously reported genes of unknown function.
  
     0.419
CCH85693.1
Universal stress protein; Function of strongly homologous gene; cell process.
  
  
 0.419
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.