STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betACholine dehydrogenase; Function of strongly homologous gene; enzyme. (537 aa)    
Predicted Functional Partners:
CCH90496.1
Zn-dependent hydrolase, glyoxylase; Function of strongly homologous gene; enzyme.
 
     0.816
psd
Phosphatidylserine decarboxylase proenzyme; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
     
 0.802
CCH90165.1
Putative Transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
    
 0.688
CCH85641.1
Homologs of previously reported genes of unknown function.
    
 0.580
CCH87526.1
Homologs of previously reported genes of unknown function.
    
 0.580
CCH90497.1
Homologs of previously reported genes of unknown function.
       0.559
CCH90751.1
Putative glycosyl transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.543
CCH88142.1
Substrate-binding region of ABC-type glycine betaine transport system.
 
   
 0.485
CCH88324.1
Choline/carnitine/betaine transporter; Function of strongly homologous gene; transporter; Belongs to the BCCT transporter (TC 2.A.15) family.
  
  
 0.482
CCH85625.1
Exported protein of unknown function; No homology to any previously reported sequences.
  
 
 0.475
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.