STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH90503.1Homologs of previously reported genes of unknown function. (71 aa)    
Predicted Functional Partners:
vdh
Valine dehydrogenase; Function of strongly homologous gene; enzyme; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
       0.606
cydD
Fused cysteine transporter subunits of ABC superfamily: membrane component; Function of strongly homologous gene; enzyme.
       0.572
CCH87277.1
Homologs of previously reported genes of unknown function.
  
     0.568
CCH86427.1
Homologs of previously reported genes of unknown function.
  
   
 0.562
CCH89331.1
Homologs of previously reported genes of unknown function.
  
     0.466
CCH90411.1
Glycine cleavage T protein (Aminomethyl transferase); Function of strongly homologous gene; enzyme; Belongs to the GcvT family.
 
     0.445
CCH86277.1
Putative DNA/RNA helicase, superfamily II; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.444
rbpA
Conserved protein of unknown function; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.426
CCH90510.1
Homologs of previously reported genes of unknown function.
 
     0.411
gpmB-2
Phosphoglycerate mutase; Function of strongly homologous gene; enzyme.
  
     0.407
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.