STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH90507.1NAD/mycothiol-dependent formaldehyde dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (363 aa)    
Predicted Functional Partners:
CCH90506.1
Zn-dependent hydrolase, glyoxylase; Function of strongly homologous gene; enzyme.
    0.947
adhfe
Alcohol dehydrogenase, iron-type; Function of strongly homologous gene; enzyme.
    
 0.599
purM
Phosphoribosylformylglycinamidine cyclo-ligase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.568
purF
Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.
       0.568
CCH89289.1
L-threonine 3-dehydrogenase; Function of strongly homologous gene; enzyme.
 
 
 
0.523
CCH90508.1
Major Facilitator Superfamily transporter; Function of strongly homologous gene; transporter.
       0.476
CCH90509.1
Homologs of previously reported genes of unknown function.
       0.476
CCH87613.1
Alcohol dehydrogenase.
 
 
 
0.437
CCH86859.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
  
 0.428
csoR
Copper-sensing transcriptional repressor csoR; Function of homologous gene experimentally demonstrated in an other organism; regulator.
  
  
 0.428
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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