STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH90542.1D-lactate dehydrogenase (cytochrome); Function of strongly homologous gene; enzyme. (970 aa)    
Predicted Functional Partners:
CCH90543.1
Serine-glyoxylate aminotransferase; Function of strongly homologous gene; enzyme.
 
  
 0.922
CCH90861.1
Putative oxidoreductase subunit with NAD(P)-binding domain and ferredoxin-like domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.830
CCH90862.1
Homologs of previously reported genes of unknown function.
  
 
 0.765
gltB
Glutamate synthase [NADPH] large chain (NADPH-GOGAT); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 0.731
lutP
L-lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
  
 0.715
etfB
Electron transfer flavoprotein subunit beta; Function of strongly homologous gene; carrier.
  
 
 0.675
etfA
Electron transfer flavoprotein alpha subunit; Function of strongly homologous gene; carrier.
  
 
 0.655
matC
Dicarboxylate-carrier protein; Function of strongly homologous gene; carrier.
 
   
 0.568
korA
2-oxoacid:ferredoxin oxidoreductase, alpha subunit; Function of strongly homologous gene; enzyme.
  
  
 0.540
cysG
Uroporphyrinogen-III C-methyltransferase; Function of strongly homologous gene; enzyme.
 
   
 0.535
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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