Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
glcD-2Glycolate oxidase, subunit GlcD; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (518 aa)    
Predicted Functional Partners:
glcF
Glycolate oxidase iron-sulfur subunit; Function of strongly homologous gene; enzyme.
 
 0.995
glcE
Glycolate oxidase FAD binding subunit; Function of strongly homologous gene; enzyme.
 
  
 
0.939
aceB-2
Malate synthase; Function of strongly homologous gene; enzyme; Belongs to the malate synthase family.
  
 
 0.759
sucA
2-oxoglutarate decarboxylase; Function of strongly homologous gene; enzyme.
  
 
 0.704
lutP
L-lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
  
 0.676
CCH90955.1
Transcriptional regulator with HTH domain and aminotransferase domain, GntR family; Function of strongly homologous gene; regulator.
    
  0.651
CCH86105.1
Putative hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
    
 0.650
korA
2-oxoacid:ferredoxin oxidoreductase, alpha subunit; Function of strongly homologous gene; enzyme.
    
 0.607
gltB
Glutamate synthase [NADPH] large chain (NADPH-GOGAT); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
 0.532
aceB
Malate synthase; Function of strongly homologous gene; enzyme.
  
 
 0.487
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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