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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trwC-2Conjugative relaxase TrwC; Function of strongly homologous gene; enzyme. (1208 aa)    
Predicted Functional Partners:
uvrD
DNA/RNA helicase, superfamily I; Function of strongly homologous gene; enzyme.
  
 
 0.802
CCH87736.1
Membrane protein of unknown function, putative kinase domain; No homology to any previously reported sequences.
  
    0.712
CCH87746.1
Homologs of previously reported genes of unknown function.
  
    0.668
CCH90777.1
HNH endonuclease; Function of strongly homologous gene; enzyme.
  
    0.587
CCH87301.1
HNH endonuclease; Function of strongly homologous gene; enzyme.
  
     0.570
CCH90685.1
Putative HNH endonuclease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.556
CCH89081.1
Putative HNH endonuclease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.550
CCH89013.1
Homologs of previously reported genes of unknown function.
  
   
 0.543
CCH86229.1
Protein of unknown function; No homology to any previously reported sequences.
  
     0.506
cydD
Fused cysteine transporter subunits of ABC superfamily: membrane component; Function of strongly homologous gene; enzyme.
  
   
 0.498
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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