STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS80429.1CBS domain-containing protein. (219 aa)    
Predicted Functional Partners:
SIS80460.1
Hypothetical protein.
 
     0.771
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
  
  
 0.765
SIT32427.1
Hypothetical protein.
  
     0.713
SIS80412.1
Pimeloyl-ACP methyl ester carboxylesterase.
       0.703
SIT17451.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.668
SIS75448.1
Protein of unknown function.
  
     0.666
SIS69195.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.655
SIS83446.1
Gliding motility-associated lipoprotein GldH.
  
     0.651
SIT10551.1
Outer membrane protein transport protein (OMPP1/FadL/TodX).
  
     0.650
SIS57396.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.633
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.