STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS81294.1Peptidoglycan-N-acetylglucosamine deacetylase; Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase. (1140 aa)    
Predicted Functional Partners:
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
       0.602
SIS94459.1
PAS domain S-box-containing protein.
 
  
 0.591
SIS82444.1
Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family.
 
  
 0.563
SIT24578.1
Hypothetical protein.
  
  
 0.543
SIT33719.1
Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family.
 
  
 0.538
SIS81261.1
Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family.
  
 
 0.530
SIT34806.1
Gramicidin S synthase 2/tyrocidine synthetase-3.
  
  
 0.529
SIT33122.1
Hypothetical protein.
 
     0.528
SIS61714.1
Hexosaminidase.
 
   
 0.521
SIT33756.1
Outer membrane protein OmpA.
  
 
 0.510
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.