STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS81738.1Transglutaminase-like superfamily protein. (644 aa)    
Predicted Functional Partners:
SIS81719.1
Protein of unknown function.
       0.777
SIT25291.1
Protein of unknown function.
 
     0.750
SIT25283.1
Antitoxin component YwqK of the YwqJK toxin-antitoxin module.
 
     0.716
SIT24130.1
Uncharacterised protein family UPF0560.
  
     0.610
SIS81758.1
Bleomycin hydrolase; Belongs to the peptidase C1 family.
       0.538
SIT29318.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
     0.525
SIS92722.1
Quinol monooxygenase YgiN.
  
   
 0.510
SIS84137.1
AsmA-like C-terminal region.
  
     0.503
SIT04852.1
TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region.
  
     0.468
SIT16115.1
Protein of unknown function.
  
     0.412
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.