STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS65009.1Phosphate ABC transporter substrate-binding protein, PhoT family. (315 aa)    
Predicted Functional Partners:
SIS64989.1
Hypothetical protein.
 
   
 0.895
SIS64598.1
Outer membrane transport energization protein ExbB.
 
  
 0.812
SIS64577.1
Outer membrane transport energization protein ExbD.
 
  
 0.798
SIS64555.1
Outer membrane transport energization protein ExbD.
 
  
 0.792
SIS78056.1
Outer membrane transport energization protein ExbD.
 
  
 0.791
SIS65025.1
Hypothetical protein.
       0.784
SIS64471.1
Outer membrane transport energization protein TonB.
 
     0.752
SIS64533.1
Outer membrane transport energization protein TonB.
 
     0.744
SIT04674.1
Alkaline phosphatase; Belongs to the alkaline phosphatase family.
  
  
 0.591
SIS58148.1
OmpA family protein.
  
 
 0.505
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.