STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS70939.1Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (676 aa)    
Predicted Functional Partners:
SIS70955.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
 
   0.959
SIS60367.1
Two component transcriptional regulator, LuxR family.
 
   0.829
SIS57259.1
Two component transcriptional regulator, LuxR family.
 
   0.828
SIS58944.1
Two component transcriptional regulator, LuxR family.
 
   0.828
SIT22039.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
 
   0.828
SIT33766.1
Two component transcriptional regulator, LuxR family.
 
   0.828
SIS74655.1
Two component transcriptional regulator, LuxR family.
 
   0.826
SIT29119.1
Two component transcriptional regulator, LuxR family.
 
   0.826
SIT27006.1
Two component transcriptional regulator, LuxR family.
 
   0.825
SIT33906.1
Two component transcriptional regulator, LuxR family.
 
   0.824
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
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