STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS73441.1Probable DNA metabolism protein. (255 aa)    
Predicted Functional Partners:
SIS73422.1
Putative DNA modification/repair radical SAM protein.
 
  
 0.953
SIS73461.1
Hypothetical protein.
       0.620
SIS73402.1
Hypothetical protein.
       0.560
SIS68943.1
tRNA threonylcarbamoyladenosine biosynthesis protein TsaB.
  
    0.531
gpmA
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
  
    0.469
SIT16384.1
Protein of unknown function.
   
   0.464
SIS73382.1
Acyl-CoA hydrolase.
       0.434
SIS71076.1
Single-strand binding protein.
   
   0.433
SIT32482.1
Single-strand binding protein.
   
   0.433
SIS73481.1
PAS domain S-box-containing protein.
       0.411
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.