STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS75014.1CHAT domain-containing protein. (905 aa)    
Predicted Functional Partners:
SIS75031.1
Hypothetical protein.
 
     0.935
SIS75045.1
Hypothetical protein.
 
     0.887
SIS75058.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.853
SIS75079.1
Hypothetical protein.
 
   
 0.853
SIT33442.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.687
SIT33448.1
Tfp pilus assembly protein PilF.
 
     0.676
SIS92096.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.660
SIT29007.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.618
SIT31183.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.600
SIS79249.1
tRNA-splicing ligase RtcB/release factor H-coupled RctB family protein.
  
     0.598
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.