STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS97731.1AraC-type DNA-binding protein. (264 aa)    
Predicted Functional Partners:
SIS97716.1
Nucleoside-diphosphate-sugar epimerase.
       0.628
SIT27359.1
AraC-type DNA-binding protein.
  
     0.526
SIS95132.1
Transcriptional regulator, TetR family.
  
     0.493
SIS97749.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
       0.486
SIT27213.1
AraC-type DNA-binding protein.
  
     0.452
SIT21983.1
AraC-type DNA-binding protein.
  
     0.444
SIS62736.1
Rhamnogalacturonan endolyase.
  
    0.428
SIS97697.1
Uncharacterized peroxidase-related enzyme; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
       0.405
SIS97767.1
Ketosteroid isomerase-related protein.
       0.403
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
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