STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS98816.1CarboxypepD_reg-like domain-containing protein. (769 aa)    
Predicted Functional Partners:
SIS98834.1
Protein of unknown function.
 
     0.942
SIT31307.1
Protein of unknown function.
 
     0.774
SIT07869.1
Protein of unknown function.
 
     0.765
SIT07831.1
Protein of unknown function.
  
     0.760
SIT34711.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.541
SIT34552.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.539
SIS98802.1
Hypothetical protein.
       0.536
SIT15904.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.535
SIT34550.1
WD40-like Beta Propeller Repeat.
  
     0.533
SIT28927.1
Phosphoribosylformylglycinamidine cyclo-ligase.
  
     0.503
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
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