STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT07180.1Type I phosphodiesterase / nucleotide pyrophosphatase. (443 aa)    
Predicted Functional Partners:
SIT07160.1
Starch-binding associating with outer membrane.
 
     0.670
SIT07171.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.594
SIT22158.1
Hypothetical protein.
  
     0.552
SIT31282.1
Peptidase C39 family protein.
  
     0.513
SIS61681.1
alpha-L-fucosidase.
  
     0.481
SIT07147.1
Type I phosphodiesterase / nucleotide pyrophosphatase.
       0.475
SIT07135.1
4-aminobutyrate aminotransferase apoenzyme; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.467
SIT32047.1
Hypothetical protein.
  
     0.443
SIS58521.1
FAD dependent oxidoreductase TIGR03364.
  
     0.417
SIT18364.1
Hypothetical protein.
  
     0.416
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
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