STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT09751.1Hypothetical protein. (570 aa)    
Predicted Functional Partners:
SIT09739.1
Hypothetical protein.
 
    
0.651
SIT04494.1
Hypothetical protein.
 
    0.517
SIS75448.1
Protein of unknown function.
  
     0.516
SIS67245.1
YD repeat-containing protein.
 
    0.494
SIT34624.1
Thiopeptide-type bacteriocin biosynthesis domain-containing protein.
  
     0.478
SIT28591.1
Hypothetical protein.
  
     0.444
SIT25569.1
RNAse Z.
  
     0.442
SIT04513.1
RHS repeat-associated core domain-containing protein.
  
    0.412
SIT29743.1
Hypothetical protein.
  
    0.408
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.