STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT03957.1Hypothetical protein. (1073 aa)    
Predicted Functional Partners:
SIT03944.1
Phosphoadenosine phosphosulfate reductase family protein.
 
     0.951
SIT03968.1
Protein of unknown function.
 
     0.951
SIT03890.1
Superfamily II DNA or RNA helicase.
 
    0.902
SIT03864.1
DNA sulfur modification protein DndD.
 
     0.883
SIT03915.1
Hypothetical protein.
       0.778
SIT03901.1
Hypothetical protein.
       0.777
SIT03930.1
Hypothetical protein.
       0.777
SIT03981.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
       0.695
SIT33338.1
Ribosomal protein S18 acetylase RimI.
  
    0.574
SIT03853.1
Hypothetical protein.
       0.539
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.