STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT18232.1Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid). (220 aa)    
Predicted Functional Partners:
SIT18245.1
Polysaccharide biosynthesis protein.
 
  
 0.930
SIT17894.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
   
 0.902
SIT18354.1
Membrane protein involved in the export of O-antigen and teichoic acid.
 
  
 0.881
SIS67686.1
Protein involved in gliding motility EpsB.
 
  
 0.857
SIT30874.1
Capsular exopolysaccharide family.
 
  
 0.838
SIT18281.1
Glycosyltransferase involved in cell wall bisynthesis.
 
  
 0.831
SIT18314.1
Glycosyltransferase involved in cell wall bisynthesis.
 
  
 0.825
SIT18344.1
Glycosyltransferase involved in cell wall bisynthesis.
 
  
 0.821
SIT18325.1
Glycosyltransferase involved in cell wall bisynthesis.
 
  
 0.817
SIT18305.1
Glycosyltransferase, GT2 family.
  
  
 0.808
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.