STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT20484.1TonB-linked outer membrane protein, SusC/RagA family. (1224 aa)    
Predicted Functional Partners:
SIT20480.1
SusD family protein.
 
 
   0.934
SIS83025.1
SusD family protein.
  
 
   0.790
SIT05894.1
SusD family protein.
  
 
   0.790
SIT28896.1
SusD family protein.
  
 
   0.790
SIS95715.1
SusD family protein.
  
 
   0.787
SIT34226.1
SusD family protein.
  
 
   0.784
SIT21626.1
SusD family protein.
  
 
   0.773
SIS95288.1
SusD family protein.
  
 
   0.764
SIS91791.1
SusD family protein.
  
 
   0.758
SIT33673.1
SusD family protein.
  
 
   0.755
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.