STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT21086.1TonB-linked outer membrane protein, SusC/RagA family. (1048 aa)    
Predicted Functional Partners:
SIT21076.1
SusD family protein.
 
 
   0.944
SIS69681.1
Starch-binding associating with outer membrane.
  
 
   0.794
SIT05083.1
Starch-binding associating with outer membrane.
  
 
   0.790
SIT08327.1
RagB/SusD domain-containing protein.
  
 
   0.760
SIT21067.1
Hypothetical protein.
       0.727
SIT30016.1
SusD family protein.
  
 
   0.705
SIT08728.1
RagB/SusD domain-containing protein.
  
 
   0.680
SIS57035.1
SusD family protein.
  
 
   0.676
SIS90815.1
SusD family protein.
  
 
   0.665
SIS95288.1
SusD family protein.
  
 
   0.659
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.