STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT24415.1Hypothetical protein. (113 aa)    
Predicted Functional Partners:
surE
5'-nucleotidase /3'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
   
   0.647
SIS75754.1
Protein of unknown function.
  
     0.550
SIT24397.1
Diacylglycerol kinase family enzyme.
 
     0.541
SIT07892.1
Hypothetical protein.
 
     0.540
SIT24421.1
GMP synthase-Glutamine amidotransferase.
 
     0.525
SIT26709.1
Hypothetical protein.
  
     0.494
SIT30997.1
Hypothetical protein.
  
     0.464
SIT34556.1
Transcriptional regulator, MarR family with acetyltransferase activity.
 
    0.425
SIS97152.1
Zinc carboxypeptidase.
  
     0.405
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.