STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT24495.1alpha-N-arabinofuranosidase. (520 aa)    
Predicted Functional Partners:
SIS60186.1
Alpha-L-arabinofuranosidase.
 
 
 
0.929
SIS99550.1
Carbohydrate binding module (family 6); Belongs to the glycosyl hydrolase 43 family.
 
 
 0.928
SIT17596.1
Alpha-L-arabinofuranosidase C-terminus.
 
 
 
0.928
SIT21265.1
Alpha-L-arabinofuranosidase.
 
 
 
0.928
SIT34398.1
Carbohydrate binding module (family 6); Belongs to the glycosyl hydrolase 43 family.
 
 
 0.927
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.918
uxaC
D-glucuronate isomerase.
     
 0.809
SIS90986.1
Glycosyl hydrolases family 28; Belongs to the glycosyl hydrolase 28 family.
     
  0.800
SIT17604.1
Hypothetical protein.
 
   
 0.738
SIT24499.1
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
    0.672
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
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