STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT25031.1Hypothetical protein. (2305 aa)    
Predicted Functional Partners:
SIT25042.1
YD repeat-containing protein.
 
    0.940
SIT25144.1
RHS repeat-associated core domain-containing protein.
 
    0.794
SIT29743.1
Hypothetical protein.
 
    0.779
SIT09789.1
RHS repeat-associated core domain-containing protein.
 
    0.778
SIT25036.1
Hypothetical protein.
       0.773
SIS81359.1
Cytochrome c551/c552.
  
     0.745
SIS93444.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.744
SIT25048.1
Hypothetical protein.
       0.736
SIT29248.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.732
SIS58061.1
Collagen triple helix repeat-containing protein.
  
    0.710
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
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