STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT25495.1RHS repeat-associated core domain-containing protein. (1519 aa)    
Predicted Functional Partners:
SIT25478.1
Uncharacterized conserved protein, implicated in type VI secretion and phage assembly.
 
  
 0.904
SIT25501.1
Hypothetical protein.
       0.773
SIT18483.1
Uncharacterized conserved protein, implicated in type VI secretion and phage assembly.
 
  
 0.766
SIT25506.1
Hypothetical protein.
       0.709
SIT25489.1
Immunity protein 17.
       0.651
SIT18550.1
Hypothetical protein.
  
     0.609
SIT25483.1
Hypothetical protein.
       0.602
SIT21690.1
Hypothetical protein.
  
     0.594
SIS79402.1
PKD repeat-containing protein.
  
     0.557
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.