STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT25726.1Transcriptional regulator, AraC family. (265 aa)    
Predicted Functional Partners:
SIT25729.1
Hypothetical protein.
       0.773
SIT25733.1
Uncharacterized oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.588
SIT34154.1
Hypothetical protein.
  
     0.489
SIT34162.1
alpha-L-rhamnosidase.
  
     0.439
SIS95132.1
Transcriptional regulator, TetR family.
  
     0.427
SIT22746.1
Hypothetical protein.
  
     0.419
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.