STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT27006.1Two component transcriptional regulator, LuxR family. (217 aa)    
Predicted Functional Partners:
SIT27002.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
   0.959
SIT32516.1
Signal transduction histidine kinase.
  
 
 0.869
SIS92801.1
Signal transduction histidine kinase.
  
 
 0.855
SIT22033.1
Signal transduction histidine kinase.
 
   0.829
SIT29122.1
Signal transduction histidine kinase.
 
   0.829
SIS60144.1
Signal transduction histidine kinase.
 
   0.828
SIT33764.1
Signal transduction histidine kinase.
 
   0.828
SIS60344.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
   0.826
SIS57237.1
Histidine kinase.
 
   0.826
SIS58927.1
Histidine kinase.
  
   0.826
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.