STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT27118.1Cytosol aminopeptidase family, N-terminal domain. (240 aa)    
Predicted Functional Partners:
SIT27120.1
Hypothetical protein.
       0.767
SIT27123.1
Putative oxidoreductase.
       0.736
SIT27127.1
Starvation-inducible DNA-binding protein; Belongs to the Dps family.
  
    0.713
SIT27130.1
Uncharacterized membrane protein YoaK, UPF0700 family.
       0.651
SIT27115.1
Alginate export.
       0.648
SIS57280.1
Deoxyadenosine/deoxycytidine kinase.
   
 0.546
SIT28543.1
Deoxyadenosine/deoxycytidine kinase.
   
 0.546
SIT27111.1
Nicotinamidase-related amidase.
  
    0.503
SIS58220.1
Molecular chaperone HtpG.
   
    0.433
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.