STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT27539.1Hypothetical protein. (217 aa)    
Predicted Functional Partners:
SIT27531.1
Hypothetical protein.
 
     0.951
SIT27551.1
Protein of unknown function.
 
     0.945
SIT27559.1
Hypothetical protein.
 
     0.945
SIT27527.1
Hypothetical protein.
 
     0.944
SIT27547.1
ATPase family associated with various cellular activities (AAA).
 
     0.942
SIT27566.1
Hypothetical protein.
 
     0.940
SIT27563.1
Conserved hypothetical phage tail region protein.
 
     0.938
SIT27508.1
Hypothetical protein.
 
     0.923
SIT27521.1
Hypothetical protein.
 
     0.922
SIT27517.1
Putative baseplate assembly protein.
 
     0.920
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.