STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT29267.1Cytochrome c peroxidase. (614 aa)    
Predicted Functional Partners:
SIT29270.1
3',5'-cyclic AMP phosphodiesterase CpdA.
  
    0.780
SIS74136.1
40-residue YVTN family beta-propeller repeat-containing protein.
 
 
 0.542
SIS74155.1
40-residue YVTN family beta-propeller repeat-containing protein.
 
 
 0.523
SIT29273.1
Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain.
       0.513
SIT29911.1
Hypothetical protein.
 
 
 0.511
SIS69476.1
Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family.
  
  
 0.476
SIS92415.1
Hypothetical protein.
 
     0.456
SIT20696.1
40-residue YVTN family beta-propeller repeat-containing protein.
  
 
 0.424
SIT20965.1
Hypothetical protein.
  
 
 0.424
SIT29917.1
Protein of unknown function.
  
 
 0.424
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.