STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT32465.1Acetyl esterase/lipase. (304 aa)    
Predicted Functional Partners:
SIT22820.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
     0.888
SIS62986.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
     0.862
SIT22134.1
Amino acid adenylation domain-containing protein.
   
 
 0.590
SIT34806.1
Gramicidin S synthase 2/tyrocidine synthetase-3.
  
 
 0.566
SIS62971.1
Sialate O-acetylesterase.
 
   
 0.504
SIS64872.1
NADH dehydrogenase subunit G.
    
 
 0.500
queA
S-adenosylmethionine--tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
       0.495
SIS64893.1
NADH dehydrogenase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
    
   0.482
SIS64910.1
NADH dehydrogenase subunit E.
    
   0.480
SIT28675.1
Sialate O-acetylesterase.
 
   
 0.480
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.