STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT32177.1Putative membrane protein. (198 aa)    
Predicted Functional Partners:
SIS82857.1
Signal transduction histidine kinase.
  
     0.651
SIT30402.1
Glycosyl transferases group 1.
  
     0.555
SIT17962.1
Glycosyl transferase family 2.
  
     0.477
SIT30107.1
DNA topoisomerase-1.
 
     0.460
SIT16638.1
Conserved hypothetical protein.
 
    0.457
SIT24578.1
Hypothetical protein.
  
     0.455
SIT04938.1
Surface antigen.
  
     0.431
SIT08499.1
Signal transduction histidine kinase.
  
     0.426
SIS97220.1
Threonine dehydrogenase.
 
    0.421
SIT33454.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.414
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.