STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT33233.1Do/DeqQ family serine protease. (515 aa)    
Predicted Functional Partners:
SIT33998.1
Trypsin-like peptidase domain-containing protein.
  
  
 
0.928
SIS90900.1
Trypsin-like peptidase domain-containing protein.
  
  
  0.927
SIS69626.1
Serine protease Do.
  
  
 
0.907
SIT30033.1
Trypsin-like peptidase domain-containing protein.
     
  0.900
SIT32312.1
Regulator of sigma E protease.
 
  
 0.612
rplI
LSU ribosomal protein L9P; Binds to the 23S rRNA.
 
 
 
 0.571
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.558
nusG
Transcription antitermination protein nusG; Participates in transcription elongation, termination and antitermination.
  
     0.517
truA
tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
 
    0.512
SIT33230.1
Hypothetical protein.
   
 
 0.511
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
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