STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT34396.1Starch-binding associating with outer membrane. (590 aa)    
Predicted Functional Partners:
SIT34395.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.930
SIT34397.1
Protein of unknown function.
 
     0.922
SIT34393.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.910
SIT34391.1
Protein of unknown function.
 
     0.809
SIT34394.1
Starch-binding associating with outer membrane.
 
    
0.747
SIT34398.1
Carbohydrate binding module (family 6); Belongs to the glycosyl hydrolase 43 family.
 
     0.739
SIT34405.1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
     0.681
SIT34392.1
alpha-N-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
 
     0.627
SIS64638.1
Iron complex outermembrane recepter protein.
  
 
   0.586
SIT34390.1
Signal transduction histidine kinase.
 
   
 0.579
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.