STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT34843.1Tyrocidine synthetase-3. (389 aa)    
Predicted Functional Partners:
SIT34806.1
Gramicidin S synthase 2/tyrocidine synthetase-3.
 
 
0.977
SIT34505.1
AMP-binding enzyme.
 
     0.976
SIT34834.1
Fengycin family lipopeptide synthetase D.
 
     0.976
SIT22134.1
Amino acid adenylation domain-containing protein.
 
 
0.975
SIT34823.1
Fengycin family lipopeptide synthetase D.
 
    
0.929
SIT15352.1
Acyl transferase domain-containing protein; Belongs to the P-Pant transferase superfamily.
 0.928
SIT14484.1
[acyl-carrier-protein] S-malonyltransferase.
 
  
 0.913
SIS65623.1
3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
  
 0.910
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
 
  
 0.909
SIT14387.1
NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.904
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.