STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT29018.1TonB-dependent receptor. (1056 aa)    
Predicted Functional Partners:
SIT29014.1
Hypothetical protein.
 
     0.905
SIT29036.1
Hypothetical protein.
 
     0.856
SIS69879.1
Hypothetical protein.
 
     0.780
SIT29021.1
FecR family protein.
  
    0.679
SIT29025.1
C-terminal processing protease CtpA/Prc, contains a PDZ domain.
 
     0.590
SIT24661.1
TonB-linked outer membrane protein, SusC/RagA family.
  
    0.478
SIT29049.1
TonB-dependent receptor.
 
   
0.442
SIT30252.1
Outer membrane receptor for ferrienterochelin and colicins.
  
     0.418
SIT29010.1
Hypothetical protein.
       0.417
SIT27215.1
Outer membrane receptor for ferrienterochelin and colicins.
  
     0.413
Your Current Organism:
Filimonas lacunae
NCBI taxonomy Id: 477680
Other names: Bacteroidetes bacterium YT0021, DSM 21054, F. lacunae, Filimonas lacunae Shiratori et al. 2009 emend. Leandro et al. 2013, NBRC 104114, strain YT0021, strain YT21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.