STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT34598.1N-acetylglutamate synthase, GNAT family. (165 aa)    
Predicted Functional Partners:
SFT34612.1
Predicted kinase.
  
    0.776
SFT34567.1
Outer membrane lipoprotein.
       0.618
SFT34581.1
Hypothetical protein.
       0.618
SFT79116.1
Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase.
  
 
 0.583
SFT34641.1
ABC-2 type transport system ATP-binding protein.
       0.513
SFT80825.1
Acetyltransferase (GNAT) family protein.
    
 0.495
SFT54551.1
Acetyltransferase (GNAT) family protein.
 
  
  0.489
SFT88676.1
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
    
  0.448
SFT34552.1
Hypothetical protein.
       0.443
SFT67203.1
2-oxoglutarate dehydrogenase E1 component.
    
  0.430
Your Current Organism:
Lishizhenia tianjinensis
NCBI taxonomy Id: 477690
Other names: CGMCC 1.7005, JCM 15141, L. tianjinensis, Lishizhenia tianjinensis Chen et al. 2009, marine bacterium H6, strain H6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.