STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT43534.1Hypothetical protein. (573 aa)    
Predicted Functional Partners:
SFT55038.1
CotH protein.
   
  0.870
SFT87621.1
Lysophospholipase L1.
    
 
 0.561
SFT91260.1
Hypothetical protein.
  
 
   0.559
SFT35788.1
Gliding motility-associated C-terminal domain-containing protein.
  
 
   0.553
SFT66511.1
Glycosyltransferase, GT2 family.
    
  0.538
SFT46197.1
GSCFA family protein.
   
 
 0.536
SFT43503.1
Alkylated DNA repair dioxygenase AlkB.
       0.527
SFT43517.1
Uncharacterized domain 1-containing protein.
       0.527
SFT63133.1
Capsular exopolysaccharide family.
    
  0.520
SFT75314.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
    
  0.520
Your Current Organism:
Lishizhenia tianjinensis
NCBI taxonomy Id: 477690
Other names: CGMCC 1.7005, JCM 15141, L. tianjinensis, Lishizhenia tianjinensis Chen et al. 2009, marine bacterium H6, strain H6
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.